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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
131
total RNA-seq
104
ATAC-seq
70
single cell RNA-seq
49
WGBS
20
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
1
pCHi-C
Assay category
20
DNA accessibility
Date released
14
June, 2019
5
October, 2019
1
November, 2018
Available data
18
bam
18
bed narrowPeak
18
bigBed narrowPeak
18
bigWig
17
bed bed3+
17
bed broadPeak
17
bigBed broadPeak
1
fastq
Organism
20
Homo sapiens
Biosample type
18
primary cell
1
cell line
1
tissue
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
20
AMP
Genome assembly (visualization)
18
GRCh38
12
hg19
Lab
20
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
20 results
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DNase-seq
primary cell
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
brain microvascular endothelial cell
1
+ See 8 more…
cell line
glomerular visceral epithelial cell
1
tissue
spleen
1
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