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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
ChIP-seq
37
DNase-seq
36
total RNA-seq
33
ATAC-seq
7
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
2
WGBS
1
FAIRE-seq
Assay category
243
DNA binding
71
DNA accessibility
43
Transcription
5
DNA methylation
3
3D chromatin structure
Target of assay
196
histone
196
histone modification
122
narrow histone mark
74
broad histone mark
40
control
10
transcription factor
4
RNA binding protein
3
other context
3
other post-translational modification
Date released
107
October, 2019
91
November, 2017
37
June, 2019
32
February, 2023
28
May, 2019
19
July, 2019
17
October, 2017
13
February, 2020
11
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
Available data
274
bam
250
bed narrowPeak
244
bigWig
146
bigBed narrowPeak
118
tagAlign
52
bed broadPeak
45
fastq
43
bigBed broadPeak
40
bed bed3+
32
tsv
5
bed bedMethyl
5
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
372
Homo sapiens
Biosample type
346
tissue
26
primary cell
Organ
791
liver
760
pancreas
683
connective tissue
491
adipose tissue
393
heart
368
epithelium
307
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
372
AMP
Genome assembly (visualization)
239
GRCh38
212
hg19
Lab
372
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
372 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
WGBS
FAIRE-seq
tissue
brain
20
14
1
1
1
spleen
20
1
1
1
2
layer of hippocampus
23
islet of Langerhans
2
14
2
4
retina
3
3
15
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primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
brain pericyte
1
1
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