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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
20
ChIP-seq
19
total RNA-seq
5
DNase-seq
5
pCHi-C
2
WGBS
1
RRBS
Assay category
34
DNA accessibility
20
DNA binding
19
Transcription
3
DNA methylation
Target of assay
9
control
9
histone
9
histone modification
7
transcription factor
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
31
February, 2023
19
October, 2019
9
November, 2018
7
December, 2018
6
June, 2019
5
January, 2019
1
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
44
bed narrowPeak
28
bam
22
fastq
19
bigWig
16
bigBed narrowPeak
6
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
81
Homo sapiens
Biosample type
77
tissue
4
primary cell
Organ
731
liver
691
pancreas
650
connective tissue
479
adipose tissue
353
heart
321
epithelium
292
kidney
210
vasculature
205
blood vessel
169
brain
158
bone element
135
artery
107
limb
83
musculature of body
60
blood
60
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
45
hg19
19
GRCh38
Lab
81
AMP-T2D consortium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
81 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
WGBS
RRBS
tissue
spleen
1
18
1
1
2
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
1
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