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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
19
total RNA-seq
16
ChIP-seq
5
DNase-seq
5
pCHi-C
Assay category
34
DNA accessibility
19
Transcription
16
DNA binding
Target of assay
control
9
histone
9
histone modification
7
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
31
February, 2023
21
October, 2019
6
January, 2019
6
June, 2019
4
November, 2018
3
December, 2018
1
February, 2020
1
March, 2020
1
October, 2017
Available data
47
bed narrowPeak
22
bam
22
bigWig
19
bigBed narrowPeak
16
fastq
6
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
bigBed bedMethyl
Organism
74
Homo sapiens
Biosample type
71
tissue
3
primary cell
Organ
887
pancreas
680
liver
646
connective tissue
488
epithelium
465
adipose tissue
365
heart
338
kidney
253
brain
212
vasculature
208
blood vessel
159
bone element
132
artery
104
limb
86
musculature of body
63
blood
63
bodily fluid
59
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
16
skeleton
15
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
74
AMP
Genome assembly (visualization)
47
hg19
20
GRCh38
Lab
74
AMP-T2D consortium
files.file_type!
bigBed bedMethyl
target.investigated_as!
control
BIOSAMPLE
ASSAY
74 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
spleen
1
12
1
1
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
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