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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
30
ATAC-seq
20
total RNA-seq
7
DNase-seq
5
pCHi-C
2
WGBS
2
single cell RNA-seq
1
RRBS
Assay category
48
DNA binding
37
DNA accessibility
22
Transcription
3
DNA methylation
Target of assay
27
histone
27
histone modification
18
broad histone mark
14
control
9
narrow histone mark
7
transcription factor
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
47
October, 2019
31
February, 2023
9
November, 2018
7
December, 2018
7
January, 2019
7
June, 2019
2
August, 2021
2
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
68
bed narrowPeak
57
bam
43
bigWig
39
bigBed narrowPeak
24
fastq
9
tsv
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
115
Homo sapiens
Biosample type
110
tissue
5
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
115
AMP
Genome assembly (visualization)
69
hg19
43
GRCh38
Lab
115
AMP-T2D consortium
organ_slims!
heart
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
WGBS
single cell RNA-seq
RRBS
tissue
tibial artery
23
1
1
2
spleen
20
1
1
1
2
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
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primary cell
retinal pigment epithelial cell
3
1
1
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