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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
25
ChIP-seq
23
DNase-seq
19
total RNA-seq
5
pCHi-C
2
WGBS
1
RRBS
Assay category
52
DNA accessibility
25
DNA binding
19
Transcription
3
DNA methylation
Target of assay
9
control
9
histone
9
histone modification
7
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
31
February, 2023
25
June, 2019
21
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
1
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
65
bed narrowPeak
49
bam
40
bigWig
37
bigBed narrowPeak
24
fastq
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
104
Homo sapiens
Biosample type
99
tissue
5
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
104
AMP
Genome assembly (visualization)
66
hg19
40
GRCh38
Lab
104
AMP-T2D consortium
BIOSAMPLE
ASSAY
104 results
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ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
pCHi-C
WGBS
RRBS
tissue
spleen
1
20
1
1
2
islet of Langerhans
1
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
renal pelvis
10
+ See 2 more…
primary cell
retinal pigment epithelial cell
3
1
1
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