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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
19
DNase-seq
2
WGBS
2
pCHi-C
1
ATAC-seq
Assay category
24
DNA binding
20
DNA accessibility
2
DNA methylation
Target of assay
10
histone
10
histone modification
8
control
6
narrow histone mark
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
Date released
18
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
4
October, 2019
2
March, 2020
1
October, 2017
Available data
42
bam
34
bigWig
32
bed narrowPeak
31
bigBed narrowPeak
24
fastq
19
bed bed3+
19
bed broadPeak
19
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
Organism
48
Homo sapiens
Biosample type
48
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
34
GRCh38
32
hg19
Lab
48
AMP-T2D consortium
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
DNase-seq
WGBS
pCHi-C
ATAC-seq
tissue
spleen
20
1
2
1
1
renal pelvis
10
islet of Langerhans
4
left renal pelvis
4
right renal pelvis
4
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