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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
4
pCHi-C
1
ATAC-seq
1
DNase-seq
Assay category
24
DNA binding
2
DNA accessibility
Target of assay
10
histone
10
histone modification
8
control
6
narrow histone mark
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
Date released
7
December, 2018
7
January, 2019
7
November, 2018
4
March, 2020
4
October, 2019
1
October, 2017
Available data
24
bam
24
fastq
16
bigWig
14
bed narrowPeak
13
bigBed narrowPeak
4
tsv
2
bed bedMethyl
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
30
Homo sapiens
Biosample type
30
tissue
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
Genome assembly (visualization)
14
GRCh38
14
hg19
Lab
30
AMP-T2D consortium
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
pCHi-C
ATAC-seq
DNase-seq
tissue
spleen
20
1
1
1
islet of Langerhans
4
ovary
1
sigmoid colon
1
small intestine
1
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