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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
70
DNase-seq
64
single cell RNA-seq
57
ChIP-seq
54
total RNA-seq
6
snATAC-seq
3
pCHi-C
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
WGBS
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
153
DNA accessibility
119
Transcription
57
DNA binding
3
DNA methylation
1
3D chromatin structure
Target of assay
26
histone
26
histone modification
17
control
14
broad histone mark
14
transcription factor
12
narrow histone mark
7
recombinant protein
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
130
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
19
October, 2019
14
May, 2023
9
November, 2018
8
February, 2021
7
December, 2018
7
January, 2019
4
July, 2019
3
December, 2019
3
March, 2020
1
October, 2017
Available data
175
bed narrowPeak
137
bam
119
bigWig
101
bigBed narrowPeak
69
bed bed3+
69
bed broadPeak
69
bigBed broadPeak
64
xls
62
txt
24
fastq
19
tsv
5
csv
3
bed bedMethyl
3
bigBed bedMethyl
1
hic
Organism
343
Homo sapiens
Biosample type
324
tissue
primary cell
19
cell line
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
296
AMP
47
KPMP
Genome assembly (visualization)
193
GRCh38
118
hg19
Lab
152
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
7
audit script error
biosample_type!
primary cell
BIOSAMPLE
ASSAY
343 results
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ATAC-seq
DNase-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
snDrop-seq
RNA microarray
STARR-seq
WGBS
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
64
27
49
6
1
1
1
spleen
1
1
20
1
2
renal cortex interstitium
11
renal pelvis
10
right kidney
10
+ See 11 more…
cell line
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
HEK293T
2
glomerular visceral epithelial cell
1
1
+ See 1 more…
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