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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
37
DNase-seq
9
ATAC-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
86
DNA binding
46
DNA accessibility
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
65
October, 2019
32
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
1
March, 2020
1
October, 2017
Available data
134
bam
106
bed narrowPeak
103
bigWig
97
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
24
fastq
3
bed bedMethyl
3
bigBed bedMethyl
1
tsv
Organism
140
Homo sapiens
Biosample type
140
tissue
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
108
GRCh38
106
hg19
Lab
140
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
spleen
20
1
1
2
1
muscle of leg
7
13
1
muscle of arm
17
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