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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
37
DNase-seq
9
ATAC-seq
7
total RNA-seq
1
pCHi-C
Assay category
86
DNA binding
46
DNA accessibility
7
Transcription
3D chromatin structure
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
69
October, 2019
32
June, 2019
7
December, 2018
7
January, 2019
7
May, 2019
7
November, 2018
6
February, 2021
3
February, 2020
1
March, 2020
1
October, 2017
Available data
138
bam
107
bigWig
106
bed narrowPeak
97
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
24
fastq
8
tsv
bed bedMethyl
3
bigBed bedMethyl
Organism
140
Homo sapiens
Biosample type
140
tissue
Organ
931
pancreas
784
liver
680
connective tissue
510
epithelium
489
adipose tissue
382
heart
349
kidney
281
brain
229
vasculature
224
blood vessel
159
bone element
141
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
110
hg19
109
GRCh38
Lab
140
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
spleen
20
1
1
1
muscle of leg
7
13
muscle of arm
17
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