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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
9
ATAC-seq
7
total RNA-seq
3
WGBS
1
pCHi-C
Assay category
86
DNA binding
9
DNA accessibility
7
Transcription
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
65
October, 2019
8
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
3
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
138
bam
107
bigWig
106
bed narrowPeak
97
bigBed narrowPeak
37
bed bed3+
bed broadPeak
37
bigBed broadPeak
24
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
106
Homo sapiens
Biosample type
106
tissue
Organ
916
pancreas
724
liver
673
connective tissue
494
epithelium
488
adipose tissue
360
heart
275
kidney
236
brain
214
vasculature
212
blood vessel
159
bone element
137
artery
82
limb
69
blood
69
bodily fluid
57
eye
44
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
106
AMP
Genome assembly (visualization)
75
GRCh38
73
hg19
Lab
106
AMP-T2D consortium
files.file_type!
bed broadPeak
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
spleen
20
1
2
1
muscle of leg
7
1
distal epiphysis of femur
1
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