Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
79
DNA binding
9
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
21
control
17
narrow histone mark
3
other context
3
other post-translational modification
3
transcription factor
Date released
65
October, 2019
8
November, 2018
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
1
October, 2017
Available data
131
bam
104
bigWig
103
bed narrowPeak
94
bigBed narrowPeak
37
bed bed3+
bed broadPeak
37
bigBed broadPeak
17
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
103
Homo sapiens
Biosample type
103
tissue
Organ
925
pancreas
727
liver
674
connective tissue
502
epithelium
488
adipose tissue
363
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
57
eye
50
musculature of body
42
blood
42
bodily fluid
41
nerve
37
embryo
20
lung
18
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
103
AMP
Genome assembly (visualization)
72
GRCh38
70
hg19
Lab
103
AMP-T2D consortium
files.file_type!
bed broadPeak
month_released!
December, 2018
BIOSAMPLE
ASSAY
103 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
spleen
13
1
2
1
muscle of leg
7
1
gastrocnemius medialis
1
4
+ See 7 more…
See all biosamples
Download