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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
36
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
79
DNA binding
45
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
21
control
17
narrow histone mark
3
other context
3
other post-translational modification
3
transcription factor
Date released
69
October, 2019
31
June, 2019
9
November, 2018
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
1
October, 2017
Available data
130
bam
103
bigWig
102
bed narrowPeak
93
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
17
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
139
Homo sapiens
Biosample type
139
tissue
Organ
865
pancreas
789
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
61
eye
43
nerve
42
blood
42
bodily fluid
31
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
139
AMP
Genome assembly (visualization)
108
GRCh38
106
hg19
Lab
139
AMP-T2D consortium
Audit category:
inconsistent ontology term
month_released!
December, 2018
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
139 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
12
1
spleen
13
1
1
2
1
muscle of arm
17
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