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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
79
DNA binding
9
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
21
control
17
narrow histone mark
3
other context
3
other post-translational modification
3
transcription factor
Date released
65
October, 2019
8
November, 2018
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
1
October, 2017
Available data
131
bam
104
bigWig
103
bed narrowPeak
94
bigBed narrowPeak
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
17
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
103
Homo sapiens
Biosample type
103
tissue
Organ
917
pancreas
777
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
62
musculature of body
57
eye
42
blood
42
bodily fluid
41
nerve
34
embryo
20
lung
20
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
103
AMP
Genome assembly (visualization)
72
GRCh38
70
hg19
Lab
103
AMP-T2D consortium
month_released!
December, 2018
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
spleen
13
1
2
1
muscle of leg
7
1
gastrocnemius medialis
1
4
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