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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
79
ChIP-seq
69
total RNA-seq
37
DNase-seq
15
ATAC-seq
4
Hi-C
3
WGBS
2
pCHi-C
Assay category
79
DNA binding
69
Transcription
52
DNA accessibility
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
21
control
17
narrow histone mark
3
other context
3
other post-translational modification
3
transcription factor
Date released
150
February, 2021
69
October, 2019
32
June, 2019
9
November, 2018
8
February, 2023
December, 2018
7
January, 2019
7
May, 2019
5
July, 2019
3
February, 2020
1
March, 2020
1
May, 2021
1
October, 2017
Available data
191
bam
162
bigWig
105
bed narrowPeak
94
bigBed narrowPeak
88
txt
66
tsv
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
17
fastq
4
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
Organism
293
Homo sapiens
Biosample type
292
tissue
1
primary cell
Organ
946
pancreas
790
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
nerve
42
blood
42
bodily fluid
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
292
AMP
1
T1D
Genome assembly (visualization)
171
hg19
169
GRCh38
Lab
292
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
month_released!
December, 2018
BIOSAMPLE
ASSAY
293 results
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RNA microarray
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
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primary cell
megakaryocyte
1
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