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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
86
DNA binding
9
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
65
October, 2019
8
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
1
October, 2017
Available data
101
bam
70
bigWig
69
bed narrowPeak
60
bigBed narrowPeak
23
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
110
Homo sapiens
Biosample type
110
tissue
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
adipose tissue
363
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
110
AMP
Genome assembly (visualization)
75
GRCh38
73
hg19
Lab
110
AMP-T2D consortium
organ_slims!
adipose tissue
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
spleen
20
1
2
1
muscle of leg
7
1
gastrocnemius medialis
1
4
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