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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
37
DNase-seq
9
ATAC-seq
7
total RNA-seq
2
WGBS
1
pCHi-C
Assay category
86
DNA binding
46
DNA accessibility
7
Transcription
2
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
69
October, 2019
32
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
July, 2019
3
February, 2020
1
March, 2020
1
October, 2017
Available data
137
bam
106
bed narrowPeak
106
bigWig
97
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
24
fastq
8
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
142
Homo sapiens
Biosample type
142
tissue
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
AMP
Genome assembly (visualization)
111
GRCh38
110
hg19
Lab
142
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
adipose tissue
month_released!
July, 2019
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
spleen
20
1
1
2
1
muscle of leg
7
13
muscle of arm
17
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