Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
37
DNase-seq
10
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
146
DNA binding
55
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
57
transcription factor
56
histone
56
histone modification
38
broad histone mark
31
control
18
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
69
October, 2019
34
December, 2018
32
June, 2019
25
January, 2019
24
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
1
March, 2020
1
October, 2017
Available data
198
bam
162
bigWig
160
bed narrowPeak
151
bigBed narrowPeak
84
fastq
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
216
Homo sapiens
Biosample type
147
tissue
61
cell line
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
208
AMP
8
T1D
Genome assembly (visualization)
166
GRCh38
165
hg19
Lab
208
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
BIOSAMPLE
ASSAY
216 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
spleen
20
1
1
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 10 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
See all biosamples
Download