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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
7
ATAC-seq
4
Hi-C
3
WGBS
3
total RNA-seq
2
pCHi-C
Assay category
50
DNA accessibility
27
DNA binding
12
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
12
histone
12
histone modification
9
control
8
broad histone mark
6
transcription factor
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
October, 2019
32
June, 2019
19
April, 2020
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
2
March, 2020
1
October, 2017
Available data
70
bam
58
bed narrowPeak
55
bigWig
51
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
24
fastq
5
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
97
Homo sapiens
Biosample type
98
tissue
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
385
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
79
AMP
19
LungMap
Genome assembly (visualization)
60
GRCh38
58
hg19
Lab
79
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
98 results
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DNase-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
Hi-C
WGBS
total RNA-seq
pCHi-C
tissue
spleen
1
20
1
2
1
muscle of leg
13
7
1
lung
10
9
1
muscle of arm
17
gastrocnemius medialis
4
1
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