Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
DNase-seq
31
ChIP-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
46
DNA accessibility
31
DNA binding
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
32
June, 2019
26
October, 2019
9
November, 2018
7
December, 2018
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2019
1
March, 2020
1
May, 2019
1
October, 2017
Available data
84
bam
53
bigWig
52
bed narrowPeak
43
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
18
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
92
Homo sapiens
Biosample type
92
tissue
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
59
GRCh38
56
hg19
Lab
92
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
92 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
spleen
1
14
1
2
1
tibial nerve
2
11
1
5
muscle of arm
17
muscle of leg
13
1
1
tibial artery
2
5
1
1
+ See 9 more…
See all biosamples
Download