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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
4
Hi-C
3
WGBS
2
RRBS
2
pCHi-C
2
total RNA-seq
1
single cell RNA-seq
Assay category
20
DNA binding
5
DNA methylation
4
3D chromatin structure
3
Transcription
Target of assay
14
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
11
August, 2017
5
July, 2019
5
November, 2018
4
December, 2018
2
February, 2020
2
June, 2019
2
March, 2020
1
January, 2019
1
May, 2019
1
May, 2022
Available data
14
bam
10
fastq
4
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
bigWig
2
tagAlign
Organism
34
Homo sapiens
Biosample type
32
tissue
2
primary cell
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
hg19
69
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
Hi-C
WGBS
RRBS
pCHi-C
total RNA-seq
single cell RNA-seq
tissue
skeletal muscle tissue
9
2
1
spleen
8
2
1
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
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primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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