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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
34
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
3
WGBS
2
ATAC-seq
2
pCHi-C
2
small RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
52
DNA binding
37
DNA accessibility
9
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
control
13
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
43
June, 2019
26
August, 2017
10
July, 2019
9
November, 2018
7
December, 2018
January, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2017
Available data
78
bigWig
74
bam
68
bed narrowPeak
54
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
19
fastq
15
tagAlign
10
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
114
Homo sapiens
Biosample type
100
tissue
14
primary cell
Organ
946
pancreas
786
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
114
AMP
Genome assembly (visualization)
81
hg19
63
GRCh38
Lab
114
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
January, 2019
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
WGBS
ATAC-seq
pCHi-C
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
spleen
13
1
2
1
1
muscle of arm
17
gastrocnemius medialis
4
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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