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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
5
RRBS
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
2
Hi-C
2
WGBS
2
pCHi-C
2
small RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
52
DNA binding
8
Transcription
7
DNA methylation
5
DNA accessibility
2
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
control
13
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
26
August, 2017
11
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
6
March, 2020
5
July, 2019
2
May, 2022
1
February, 2020
1
January, 2018
1
October, 2017
Available data
45
bigWig
41
bam
36
bed narrowPeak
26
fastq
22
bigBed narrowPeak
15
bed broadPeak
15
tagAlign
9
tsv
5
bed bedMethyl
5
bigBed bedMethyl
3
bed bed3+
2
bedpe bed3+
2
bigBed broadPeak
2
hic
1
txt
Organism
76
Homo sapiens
Biosample type
62
tissue
14
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
49
hg19
31
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
organ_slims!
limb
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
RRBS
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
spleen
20
1
1
2
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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