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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
30
ATAC-seq
24
total RNA-seq
7
DNase-seq
5
pCHi-C
2
WGBS
1
RRBS
Assay category
60
DNA binding
37
DNA accessibility
24
Transcription
3
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
20
control
13
narrow histone mark
7
transcription factor
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
63
October, 2019
31
February, 2023
9
November, 2018
7
December, 2018
7
January, 2019
7
June, 2019
2
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
74
bed narrowPeak
73
bam
53
bigWig
45
bigBed narrowPeak
24
fastq
11
tsv
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
129
Homo sapiens
Biosample type
124
tissue
5
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
129
AMP
Genome assembly (visualization)
79
hg19
53
GRCh38
Lab
129
AMP-T2D consortium
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
WGBS
RRBS
tissue
tibial nerve
35
1
5
2
spleen
20
1
1
1
2
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
1
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