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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
3
DNase-seq
2
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
RRBS
1
pCHi-C
1
total RNA-seq
Assay category
37
DNA binding
5
DNA accessibility
3
DNA methylation
2
3D chromatin structure
1
Transcription
Target of assay
21
histone
21
histone modification
13
broad histone mark
10
control
8
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
21
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
2
July, 2019
2
March, 2020
1
October, 2017
Available data
45
bam
32
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
24
fastq
5
bed broadPeak
5
bigBed broadPeak
3
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
49
Homo sapiens
Biosample type
26
tissue
23
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
33
hg19
29
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
DNase-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
total RNA-seq
tissue
spleen
20
1
2
1
1
pericardium
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
pericardium fibroblast
1
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