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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
19
DNase-seq
2
WGBS
2
pCHi-C
1
ATAC-seq
Assay category
20
DNA accessibility
20
DNA binding
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
18
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
2
March, 2020
1
October, 2017
Available data
42
bam
34
bigWig
32
bed narrowPeak
31
bigBed narrowPeak
24
fastq
19
bed bed3+
19
bed broadPeak
19
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
Organism
44
Homo sapiens
Biosample type
44
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
34
GRCh38
32
hg19
Lab
44
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
large intestine
BIOSAMPLE
ASSAY
44 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
pCHi-C
ATAC-seq
tissue
spleen
20
1
2
1
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
bladder (urinary bladder)
1
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