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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
3
DNase-seq
2
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
34
DNA binding
5
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
21
histone
21
histone modification
13
broad histone mark
10
control
8
narrow histone mark
6
transcription factor
3
other context
other post-translational modification
Date released
21
October, 2019
7
December, 2018
7
January, 2019
6
November, 2018
2
March, 2020
1
October, 2017
Available data
41
bam
28
bigWig
24
bed narrowPeak
23
bigBed narrowPeak
21
fastq
5
bed broadPeak
5
bigBed broadPeak
3
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
44
Homo sapiens
Biosample type
22
primary cell
22
tissue
Organ
946
pancreas
789
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
22
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
28
hg19
25
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
DNase-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
tissue
spleen
17
1
2
1
1
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