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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
37
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
48
DNA binding
46
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
39
October, 2019
32
June, 2019
9
November, 2018
7
December, 2018
6
February, 2021
5
July, 2019
3
February, 2020
3
January, 2019
3
May, 2019
1
March, 2020
1
October, 2017
Available data
100
bam
69
bigWig
68
bed narrowPeak
59
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
20
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
109
Homo sapiens
Biosample type
109
tissue
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
316
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
109
AMP
Genome assembly (visualization)
74
GRCh38
72
hg19
Lab
109
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
19
2
1
5
spleen
16
1
1
2
1
muscle of arm
17
muscle of leg
3
13
1
tibial artery
9
2
1
1
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