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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
ATAC-seq
2
WGBS
1
pCHi-C
Assay category
25
DNA binding
5
DNA accessibility
5
Transcription
2
DNA methylation
Target of assay
30
histone
histone modification
20
broad histone mark
19
control
10
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
18
October, 2019
9
November, 2018
7
December, 2018
1
February, 2020
1
January, 2019
1
March, 2020
1
October, 2017
Available data
36
bam
18
fastq
17
bigWig
11
bed narrowPeak
9
bigBed narrowPeak
6
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
38
Homo sapiens
Biosample type
38
tissue
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
17
GRCh38
15
hg19
Lab
38
AMP-T2D consortium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
tissue
spleen
14
1
1
2
1
tibial nerve
11
5
2
1
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