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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
79
ChIP-seq
8
WGBS
7
ATAC-seq
3
DNase-seq
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
79
DNA binding
10
DNA accessibility
8
DNA methylation
Target of assay
38
histone
38
histone modification
32
control
24
broad histone mark
23
transcription factor
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
45
August, 2017
23
October, 2018
12
July, 2019
10
November, 2018
7
December, 2018
5
January, 2019
2
February, 2020
2
March, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
463
bam
437
bigWig
402
tsv
65
fastq
23
bed narrowPeak
20
bigBed narrowPeak
7
bed bed3+
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
3
bigBed broadPeak
1
bedpe bed3+
Organism
501
Homo sapiens
Biosample type
499
tissue
2
primary cell
1
in vitro differentiated cells
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
502
AMP
Genome assembly (visualization)
437
GRCh38
436
hg19
Lab
502
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
502 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
25
3
spleen
18
2
1
1
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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