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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
228
ChIP-seq
189
total RNA-seq
24
ATAC-seq
7
DNase-seq
7
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
228
DNA binding
193
Transcription
31
DNA accessibility
9
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
116
control
109
histone modification
108
histone
82
recombinant protein
62
narrow histone mark
58
RNA binding protein
46
broad histone mark
23
chromatin remodeller
5
other context
5
other post-translational modification
Date released
194
May, 2020
74
November, 2017
50
August, 2017
40
May, 2022
30
December, 2017
24
August, 2021
12
January, 2019
10
July, 2019
10
November, 2018
7
October, 2019
5
December, 2018
5
December, 2019
4
March, 2020
3
February, 2021
2
June, 2019
1
February, 2020
1
October, 2017
Available data
373
bam
299
bigWig
175
tsv
156
fastq
120
bed narrowPeak
86
tagAlign
51
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
12
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
472
Homo sapiens
Biosample type
341
tissue
104
cell line
14
primary cell
13
in vitro differentiated cells
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
344
kidney
341
heart
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
472
AMP
Genome assembly (visualization)
304
hg19
255
GRCh38
Lab
412
AMP-T2D consortium
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
472 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
108
167
20
2
3
1
1
1
1
1
spleen
14
1
1
2
1
right lobe of liver
8
3
1
2
1
2
cell line
HepG2
81
14
1
1
2
2
2
1
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
13
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