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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
Assay category
51
DNA binding
Target of assay
99
histone
99
histone modification
51
narrow histone mark
48
broad histone mark
38
control
15
transcription factor
8
RNA binding protein
3
nucleotide modification
3
other context
3
other post-translational modification
1
chromatin remodeller
Date released
11
September, 2018
9
October, 2019
8
August, 2017
7
December, 2017
4
November, 2019
2
August, 2021
2
January, 2019
2
June, 2019
2
May, 2021
2
November, 2017
1
March, 2020
1
May, 2019
Available data
51
bam
50
bed narrowPeak
50
bigWig
30
fastq
17
bigBed narrowPeak
3
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
51
Homo sapiens
Biosample type
35
primary cell
8
in vitro differentiated cells
6
cell line
2
tissue
Organ
117
brain
73
pancreas
60
liver
49
epithelium
33
connective tissue
26
vasculature
25
blood vessel
25
heart
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
embryo
8
nerve
6
artery
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
49
AMP
2
T1D
Genome assembly (visualization)
50
GRCh38
50
hg19
Lab
51
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
51 results
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Clear Filters
ChIP-seq
primary cell
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
epithelial cell of proximal tubule
4
pancreatic acinar cell
4
pancreatic alpha cell
4
+ See 6 more…
in vitro differentiated cells
hepatocyte
5
Hepatic endoderm
2
pancreatic PP cell
1
cell line
EndoC_BH1
6
tissue
spleen
2
See all biosamples
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