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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
13
ChIP-seq
2
pCHi-C
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
13
DNA binding
Target of assay
9
control
4
transcription factor
Date released
66
February, 2021
35
February, 2023
6
October, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
May, 2019
1
March, 2020
1
May, 2021
Available data
102
bam
85
bigWig
74
bed narrowPeak
59
tsv
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
118
Homo sapiens
Biosample type
66
cell line
50
tissue
2
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
117
AMP
1
T1D
Genome assembly (visualization)
103
GRCh38
68
hg19
Lab
117
AMP-T2D consortium
1
Kyle Gaulton, UCSD
files.file_type!
bigBed narrowPeak
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
118 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
2
tibial artery
1
1
5
pulmonary artery
2
thymus
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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