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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
39
DNase-seq
11
total RNA-seq
9
Hi-C
8
ATAC-seq
4
single cell RNA-seq
3
WGBS
3
pCHi-C
1
FAIRE-seq
Assay category
108
DNA binding
48
DNA accessibility
15
Transcription
9
3D chromatin structure
3
DNA methylation
Target of assay
81
histone
81
histone modification
51
broad histone mark
30
narrow histone mark
24
control
3
RNA binding protein
3
transcription factor
Date released
64
October, 2019
52
May, 2019
35
June, 2019
13
July, 2019
6
February, 2021
5
March, 2020
4
August, 2021
3
February, 2020
3
November, 2017
1
May, 2021
Available data
166
bam
135
bigWig
126
bed narrowPeak
118
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
41
bed bed3+
17
tsv
3
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
186
Homo sapiens
Biosample type
157
tissue
29
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
185
AMP
1
T1D
Genome assembly (visualization)
141
hg19
134
GRCh38
Lab
185
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
artery
BIOSAMPLE
ASSAY
186 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
FAIRE-seq
tissue
tibial nerve
35
2
5
1
aorta
13
1
1
4
2
1
muscle of leg
7
13
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
+ See 12 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
See all biosamples
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