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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
574
ChIP-seq
203
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
5
pCHi-C
4
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
GRO-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
574
DNA binding
Target of assay
341
transcription factor
115
control
115
histone modification
114
histone
82
recombinant protein
68
narrow histone mark
58
RNA binding protein
46
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
76
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
22
August, 2021
9
February, 2018
5
October, 2019
Available data
532
bam
474
fastq
446
bigWig
427
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
9
bed bed3+
3
tar
Organism
574
Homo sapiens
Biosample type
378
cell line
155
tissue
37
in vitro differentiated cells
4
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
0
thymus
Project
574
AMP
Genome assembly (visualization)
444
hg19
375
GRCh38
Lab
556
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
574 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
tissue
liver
145
right lobe of liver
10
in vitro differentiated cells
pancreatic endoderm
18
hepatocyte
15
Hepatic endoderm
4
primary cell
hepatocyte
4
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