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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
408
total RNA-seq
36
ChIP-seq
4
ATAC-seq
3
WGBS
3
pCHi-C
3
small RNA-seq
1
DNase-seq
1
RNA microarray
Assay category
411
Transcription
36
DNA binding
5
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
386
February, 2021
39
August, 2017
12
July, 2019
9
August, 2021
3
May, 2021
2
February, 2020
2
March, 2020
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
478
bam
454
bigWig
416
tsv
fastq
27
bed narrowPeak
10
bigBed narrowPeak
9
bed bed3+
8
tagAlign
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
458
Homo sapiens
Biosample type
447
tissue
8
cell line
2
in vitro differentiated cells
2
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
458
AMP
1
T1D
Genome assembly (visualization)
415
hg19
411
GRCh38
Lab
458
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
459 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
visceral abdominal adipose tissue
3
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cell line
H1-hESC
8
in vitro differentiated cells
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
mesenchymal stem cell of adipose
1
1
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