Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
snATAC-seq
10
total RNA-seq
9
single cell RNA-seq
3
pCHi-C
Assay category
19
Transcription
10
DNA accessibility
Date released
19
April, 2020
8
August, 2021
3
May, 2021
2
March, 2020
Available data
36
bam
29
bigWig
fastq
16
tsv
14
bed narrowPeak
3
bed bed3+
Organism
31
Homo sapiens
Biosample type
22
tissue
8
cell line
2
in vitro differentiated cells
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
19
LungMap
12
AMP
1
T1D
Genome assembly (visualization)
10
GRCh38
10
hg19
Lab
19
Xin Sun, UCSD
12
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
32 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
total RNA-seq
single cell RNA-seq
pCHi-C
tissue
lung
10
9
1
thymus
2
cell line
H1-hESC
8
in vitro differentiated cells
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
Download