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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
15
total RNA-seq
2
DNase-seq
2
pCHi-C
1
ATAC-seq
Assay category
35
DNA binding
15
Transcription
3
DNA accessibility
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
42
October, 2019
8
August, 2021
3
May, 2021
1
February, 2020
1
March, 2020
Available data
78
bam
60
bigWig
41
bed narrowPeak
fastq
26
bigBed narrowPeak
20
tsv
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
55
Homo sapiens
Biosample type
45
tissue
8
cell line
2
in vitro differentiated cells
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
54
AMP
1
T1D
Genome assembly (visualization)
41
GRCh38
41
hg19
Lab
54
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
ATAC-seq
tissue
tibial nerve
35
5
2
1
thymus
2
cell line
H1-hESC
8
in vitro differentiated cells
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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