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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
2
pCHi-C
1
ATAC-seq
1
ChIP-seq
Assay category
10
Transcription
1
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
8
August, 2021
3
May, 2021
2
October, 2019
1
March, 2020
Available data
37
bam
30
bigWig
fastq
15
bed narrowPeak
15
tsv
3
bed bed3+
1
tagAlign
Organism
14
Homo sapiens
Biosample type
8
cell line
4
tissue
2
in vitro differentiated cells
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
13
AMP
1
T1D
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
13
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
14 results
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Clear Filters
total RNA-seq
pCHi-C
ATAC-seq
ChIP-seq
cell line
H1-hESC
8
tissue
thymus
2
islet of Langerhans
1
pituitary gland
1
in vitro differentiated cells
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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