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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
10
ChIP-seq
2
pCHi-C
1
GRO-seq
Assay category
14
Transcription
10
DNA binding
Target of assay
12
histone
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
8
August, 2021
7
December, 2017
7
February, 2018
3
May, 2021
1
January, 2018
1
March, 2020
Available data
24
bam
18
bigWig
15
fastq
15
tsv
3
bed narrowPeak
1
bed bed3+
Organism
27
Homo sapiens
Biosample type
17
in vitro differentiated cells
8
cell line
2
tissue
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
1
T1D
Genome assembly (visualization)
18
GRCh38
18
hg19
1
hg18
Lab
26
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
bone marrow
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
27 results
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Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
8
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
tissue
thymus
2
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