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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
ChIP-seq
Assay category
495
Transcription
175
DNA binding
34
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
90
histone
90
histone modification
48
broad histone mark
43
transcription factor
42
control
41
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
117
August, 2017
23
October, 2018
13
December, 2017
12
June, 2019
9
February, 2018
1
October, 2019
Available data
124
bam
112
fastq
89
bigWig
72
bed narrowPeak
22
tagAlign
15
bigBed narrowPeak
14
bed bed3+
1
bed broadPeak
Organism
175
Homo sapiens
Biosample type
89
in vitro differentiated cells
74
tissue
12
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
0
thymus
Project
175
AMP
Genome assembly (visualization)
91
hg19
90
GRCh38
Lab
175
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
18
missing controlled_by
Audit category:
9
inconsistent control read length
BIOSAMPLE
ASSAY
175 results
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ChIP-seq
in vitro differentiated cells
adipocyte
67
pancreatic endoderm
18
Hepatic endoderm
4
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
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primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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