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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
Assay category
69
DNA binding
Target of assay
355
transcription factor
200
histone modification
199
histone
128
control
100
narrow histone mark
99
broad histone mark
82
recombinant protein
69
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
34
November, 2017
19
November, 2018
5
May, 2024
4
December, 2017
3
April, 2019
2
May, 2019
1
August, 2021
1
June, 2019
Available data
67
bed narrowPeak
67
bigWig
63
bam
61
bigBed narrowPeak
57
fastq
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
69
Homo sapiens
Biosample type
54
cell line
12
tissue
2
in vitro differentiated cells
1
primary cell
Organ
58
liver
11
heart
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
0
thymus
Project
69
AMP
Genome assembly (visualization)
62
GRCh38
61
hg19
Lab
63
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
cell line
HepG2
54
tissue
left cardiac atrium
5
heart left ventricle
3
coronary artery
1
liver
1
right atrium auricular region
1
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in vitro differentiated cells
hepatocyte
2
primary cell
cardiac fibroblast
1
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