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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
total RNA-seq
12
single cell RNA-seq
10
snATAC-seq
5
pCHi-C
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
47
DNA accessibility
16
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
19
April, 2020
16
October, 2017
14
July, 2019
4
March, 2020
2
November, 2018
1
February, 2023
1
May, 2021
Available data
238
bam
217
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
11
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
290
Homo sapiens
Biosample type
270
tissue
21
primary cell
Organ
602
liver
543
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
271
AMP
19
LungMap
1
T1D
Genome assembly (visualization)
212
GRCh38
159
hg19
Lab
271
AMP-T2D consortium
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
291 results
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ChIP-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
lung
9
10
1
caudate nucleus
15
1
substantia nigra
16
+ See 76 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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