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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
3
pCHi-C
1
ATAC-seq
1
DNase-seq
Assay category
20
DNA binding
2
DNA accessibility
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
7
December, 2018
7
January, 2019
7
November, 2018
2
March, 2020
1
May, 2021
1
October, 2017
Available data
22
bam
22
fastq
14
bed narrowPeak
14
bigWig
13
bigBed narrowPeak
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
25
Homo sapiens
Biosample type
25
tissue
Organ
893
pancreas
784
liver
677
connective tissue
485
adipose tissue
471
epithelium
350
kidney
343
heart
284
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
24
AMP
1
T1D
Genome assembly (visualization)
14
GRCh38
14
hg19
Lab
24
AMP-T2D consortium
1
Kyle Gaulton, UCSD
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
pCHi-C
ATAC-seq
DNase-seq
tissue
spleen
20
1
1
1
thymus
2
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