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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
75
total RNA-seq
46
ATAC-seq
11
DNase-seq
6
single cell RNA-seq
5
Hi-C
3
pCHi-C
2
WGBS
1
FAIRE-seq
1
GRO-seq
1
RRBS
Assay category
81
Transcription
58
DNA accessibility
5
3D chromatin structure
3
DNA methylation
Date released
60
February, 2021
35
February, 2023
14
August, 2021
12
July, 2019
7
June, 2019
7
October, 2019
5
March, 2020
4
February, 2018
3
February, 2020
3
May, 2021
1
January, 2018
Available data
97
bam
91
bigWig
83
tsv
58
bed narrowPeak
13
bed bed3+
12
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
5
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
151
Homo sapiens
Biosample type
68
cell line
62
tissue
14
primary cell
7
in vitro differentiated cells
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
150
AMP
1
T1D
Genome assembly (visualization)
130
GRCh38
100
hg19
1
hg18
Lab
150
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
audit script error
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
151 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
pCHi-C
WGBS
FAIRE-seq
GRO-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
8
H1-hESC
8
tissue
coronary artery
1
36
2
aorta
1
4
1
1
2
tibial artery
1
1
2
ascending aorta
2
1
thoracic aorta
2
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
in vitro differentiated cells
pancreatic endoderm
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
See all biosamples
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