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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
6
single cell RNA-seq
4
DNase-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
40
DNA binding
6
DNA accessibility
6
Transcription
1
3D chromatin structure
Target of assay
33
histone
33
histone modification
23
broad histone mark
10
narrow histone mark
7
control
Date released
66
February, 2021
50
May, 2019
47
October, 2019
35
February, 2023
12
July, 2019
7
June, 2019
6
August, 2021
6
November, 2017
5
March, 2020
3
February, 2020
1
May, 2021
Available data
46
bam
36
bigWig
34
bed narrowPeak
33
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
6
tsv
4
bed bed3+
1
hic
1
tar
Organism
53
Homo sapiens
Biosample type
32
tissue
21
primary cell
Organ
160
kidney
100
heart
86
brain
69
limb
53
blood vessel
53
vasculature
42
liver
42
nerve
41
epithelium
28
artery
22
pancreas
21
eye
21
vein
9
connective tissue
8
embryo
4
gonad
4
ovary
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
0
thymus
Project
53
AMP
Genome assembly (visualization)
37
hg19
33
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
tissue
tibial artery
23
2
1
aorta
4
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
17
2
1
1
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