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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
5
Hi-C
3
pCHi-C
3
total RNA-seq
1
RRBS
Assay category
35
DNA accessibility
9
Transcription
5
3D chromatin structure
1
DNA methylation
Date released
35
February, 2023
6
August, 2021
4
March, 2020
3
February, 2020
3
July, 2019
1
May, 2021
1
October, 2019
Available data
bam
153
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
69
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
4
fastq
4
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
53
Homo sapiens
Biosample type
48
tissue
5
primary cell
Organ
246
pancreas
210
kidney
204
epithelium
182
heart
103
liver
93
bone element
84
connective tissue
54
eye
51
vasculature
50
blood vessel
44
adipose tissue
42
brain
39
artery
36
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
52
AMP
1
T1D
Genome assembly (visualization)
35
GRCh38
6
hg19
Lab
52
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
target.investigated_as!
control
files.file_type!
bam
BIOSAMPLE
ASSAY
53 results
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ATAC-seq
single cell RNA-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
tissue
coronary artery
35
1
aorta
4
1
1
pulmonary artery
2
thymus
2
ascending aorta
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
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