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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
2
DNase-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
11
DNA binding
3
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
narrow histone mark
2
control
Date released
15
October, 2019
2
March, 2020
1
May, 2021
Available data
14
bam
10
bigWig
8
bed narrowPeak
8
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
18
Homo sapiens
Biosample type
16
primary cell
2
tissue
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
17
AMP
1
T1D
Genome assembly (visualization)
12
hg19
7
GRCh38
Lab
17
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
11
2
2
1
tissue
thymus
2
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