Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
45
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
209
DNA binding
50
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
86
October, 2019
82
November, 2017
43
June, 2019
28
May, 2019
16
October, 2017
12
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
244
bam
220
bigWig
210
bed narrowPeak
134
bigBed narrowPeak
118
tagAlign
54
bed broadPeak
45
bed bed3+
45
bigBed broadPeak
23
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
283
Homo sapiens
Biosample type
283
tissue
21
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
283
AMP
Genome assembly (visualization)
221
GRCh38
161
hg19
Lab
283
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
283 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 80 more…
See all biosamples
Download